PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g006270.1
Common NameMTR_2g006270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 457aa    MW: 51921.1 Da    PI: 8.6508
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g006270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.4e-16116218199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldg 86 
                      f+k+lt+sdv++ + + +p+ +a+ +       +  + +s+ l ++d +g++ ++++  r+ ++r +l  + W++Fvk ++L +gD+v+F+  +
  Medtr2g006270.1 116 FVKTLTRSDVNNARSFHIPRFCAD-NvfpqldlE-AESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYiSEWNSFVKRKKLVAGDSVIFM--K 205
                      89*****************87775.55**99852.4458889***************887777775554469*******************..7 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      +s+++ +v+++r+
  Medtr2g006270.1 206 DSTGKIFVGIRRN 218
                      79999******97 PP

2Auxin_resp42.23.4e-15241314282
       Auxin_resp   2 ahaastksvFevvYnPr.astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       + a+++++Fe+vY+P+   + +Fvv  + v +++k+++ + mR+km+  t+ ss++ ++Gt++ vs +++       Wr+L
  Medtr2g006270.1 241 LKLAEENKAFEIVYYPQgDDWCDFVVDGNVVDESMKIQWNPRMRVKMK--TDKSSRIPYQGTISIVSRTSN------LWRML 314
                      6789999*********94579************************997..7899***********999555......56666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-24110219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-20112217IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-11115217No hitNo description
PROSITE profilePS508639.178116219IPR003340B3 DNA binding domain
PfamPF023624.2E-14116218IPR003340B3 DNA binding domain
SMARTSM010194.9E-12116219IPR003340B3 DNA binding domain
PfamPF065077.1E-13240313IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSLQKQPSHV RPEIWHTCAT AAVKIPKLHS RVYYFPQGHL ENASPSSSSI THTHSFLQSF  60
RPFTLCIVSA VDLLADPHTD EVFVKLLLTP ITNDVHLENP KEEVANLNDR NEVVSFVKTL  120
TRSDVNNARS FHIPRFCADN VFPQLDLEAE SSSQHLFVTD VHGEVSKFYH VCRGFPKRNM  180
LYISEWNSFV KRKKLVAGDS VIFMKDSTGK IFVGIRRNTQ FVAAAAEQKK DELEKAVMEA  240
LKLAEENKAF EIVYYPQGDD WCDFVVDGNV VDESMKIQWN PRMRVKMKTD KSSRIPYQGT  300
ISIVSRTSNL WRMLQVNWDE FQVSQIPRRV NPWWVELISH KPAPTPFPQT KKFRTTQSSA  360
QLSDKKETLL NGDGFPVDIQ RVRHDLVSIS GPIHSHIILN SSETKFPATH NCNTKNDSDG  420
SIMLFGKIIQ PHVSNFHNSH IKGDDGYKSC GFGVKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-441333654388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343220.0AC134322.25 Medicago truncatula clone mth2-17i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592973.10.0auxin response factor
TrEMBLG7INP60.0G7INP6_MEDTR; Auxin response factor
STRINGGLYMA13G02410.13e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-84auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]